...if you notice something weird related with syscon... yeah is better to fix it
Im going to explain this a bit better because is interesting and is going to help you identify the posible problems you could have in the future, my guess is you could have 3 different types of problems
Problems when syscon changes his "power states"
I dont know for sure, but most probably syscon have at least 2 power states, one of them is the normal operation mode (when most subcircuits inside syscon chip are enabled), and the other is the "low power" mode when the PS3 is in standby (fan stopped, and RED led)
The syscon changes his power state at the same time you turn ON/FF the PS3... at that point syscon is going to change his voltage requirements
Problems when syscon does some special procedures
Probably there are some operations where all/most of the circuits inside syscon are active... right now i dont know much about this
Problems when your PSU gets old
PSU---> capacitors---syscon
Glacier ---> lake ---> your house
The lake stabilizes the amount of water that goes to your home
Incase the glacier works "fine" (generating always the same amount of water) then you could remove the lake
But if the glacier have periods where it doesnt generates any water... and you remove the lake... then you are not going to have water at home in that periods
So... by removing the capacitors you are making the syscon more sensible to the variations of voltage generated by the PSU
Now it works fine because your PSU seems to be in good state... but eventually when your PSU gets older you could have problems in syscon, and at that point you will have to:
-Add the capacitors (and squeeze a bit more of the PSU lifetime)
-Replace the PSU